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ChEMBL Data Deposition Guide
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  • Introduction
  • Overview
    • Source Identifier
    • Depositor-Defined Identifiers
      • RIDX
      • AIDX
      • CIDX
  • File Types, Naming, and Deposition
  • File structure
    • File hierarchy
    • Simplified input data schema
    • Deposition file list
    • Field names and data types - minimal data submission
      • REFERENCE.tsv
      • COMPOUND_RECORD.tsv
      • COMPOUND_CTAB.sdf
        • Creating a COMPOUND_CTAB file from a file containing SMILES strings
      • ASSAY.tsv
      • ACTIVITY.tsv
      • Controlled vocabularies
        • TARGET_TYPE list
        • ACTION_TYPE valid names
    • Supplementary data files
      • Additional assay information in the ASSAY_PARAM file
      • Adding context using the ACTIVITY_PROPERTIES file
      • INFO.txt
  • Complex results sets
    • Linking files through depositor defined IDs
    • Linking multiple result types using TEOID
    • Supplementary data in the ACTIVITY_SUPP file
    • Flexible SAMID mapping
    • Field names and data types - complex data submission
  • Example dataset
  • Common data issues
  • Advanced features and documentation
  • FAQs
  • Glossary
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  1. Overview
  2. Depositor-Defined Identifiers

CIDX

Depositor-defined Compound IDs

CIDX Requirements

  • Depositor-defined Compound IDs (CIDXs) are defined in COMPOUND_RECORD deposition files.

  • The CIDX string should be meaningful to the depositor, for example the identifier, name or abbreviations used in the publication.

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